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Welcome

  • Topics
  • Prerequisites
  • Organizers of this course
  • CSC services
  • Accounts and projects
  • Research use cases for Puhti

Supercomputer - intro

  • Why and how?
  • Supercomputer setup
  • CSC Supercomputers
  • Connecting to supercomputer
  • Exercise: Puhti web interface

GIS tools and data

  • GIS tools
  • Spatial data in Puhti
  • STAC
  • Exercise: STAC

Jobs

  • Batch jobs
  • Job monitoring

Run in parallel

  • Parallel computing
  • Exercise: GDAL
  • Parallel Python
  • Exercise: Python
  • Parallel R
  • Exercise: R

Data

  • Moving data
  • Best practice tips for data
  • Allas – object storage
  • Allas exercise

Installations

  • Installing own tools

Wrap-up

  • CSC support
  • Where to go from here
  • CSC and Unix cheatsheet
  • Terminal
  • .md

Topics

Topics#

General

  • Choose suitable CSC computing service

  • Get CSC user account and project

  • Look/ask for help

Supercomputer intro

  • Why to use a supercomputer

  • What is a supercomputer

  • CSC supercomputers

  • Connect to a supercomputer

Tools and scripting

  • Availability:

    • Pre-installed tools at CSC

    • Installion of tools or extra packages to Python and R

  • Parallel computing:

    • Do your analysis in parallel

    • Run Python scripts in parallel

    • Run R scripts in parallel

  • Batch jobs

    • Write batch job script and submit it to SLURM

    • Check the results and resource usage

Data

  • Find data:

    • Spatial data available at CSC

    • Use STAC for finding raster data

  • Move the data to the computing environment

  • Keep more permanent data and backups in Allas

  • Data tips

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Welcome to the course

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Prerequisites

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